BrukerSky is a modular MATLAB-based database and reconstruction system for Bruker data. BrukerSky automatically creates bash scripts for all reconstructions. These scripts can either be executed manually, providing full control of the execution, or automatically.

Repository / Documentation - MATLAB

Homogeneity Enabled Incremental Dipole Inversion (HEIDI) is a dipole inversion algorithm for quantitative susceptibility mapping (QSM). The algorithm consists of an underregularized LSQR-based iterative solution with data-integrity constrained weighted total variation post-processing.

Repository / Publication - MATLAB

The Pipeline for Super Simple Serial Slurm (pi4s) is a super-simple Bash-based pipeline for Slurm. The pipeline submits Slurm jobs with proper dependencies between consecutive jobs, ensuring that pipeline jobs start in the right order.

Repository - Bash